PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G20160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 222aa    MW: 22809.3 Da    PI: 6.6782
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G20160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.77e-5818113297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+eplk+yl+k+releg
  OPUNC07G20160.1  18 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEPLKLYLHKFRELEG 111
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      ek
  OPUNC07G20160.1 112 EK 113
                      97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-5416131IPR009072Histone-fold
SuperFamilySSF471132.79E-4020115IPR009072Histone-fold
PfamPF008087.2E-282387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-205169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-207088No hitNo description
PRINTSPR006151.3E-2089107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPDSDNESGG PGELASAREQ DRFLPIANVS RIMKKALPAN AKISKDAKET VQECVSEFIS  60
FITGEASDKC QREKRKTING DDLLWAMTTL GFEDYIEPLK LYLHKFRELE GEKAIGAGAG  120
AASSGASGSG SGSQYQQDAS RNNGGYGMYG GAGAGGGGGG GMIMMMGQPM YGSPPASAGY  180
AQPPPPHHHQ MVMGGKGGYG HGGGGGGGGP SPSSGYGRQD RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4816108193NF-YB
4awl_B3e-4816108294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4816108294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B3e-4818108292Transcription factor HapC (Eurofung)
4g92_B3e-4818108292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880371e-165AB288037.1 Oryza sativa Japonica Group OsHAP3F gene for HAP3 subunit of HAP complex, complete cds.
GenBankAK1116211e-165AK111621.1 Oryza sativa Japonica Group cDNA clone:J013109P12, full insert sequence.
GenBankAK1121181e-165AK112118.1 Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence.
GenBankAP0051931e-165AP005193.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0493C06.
GenBankAP0064581e-165AP006458.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06.
GenBankAP0149631e-165AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657935.12e-91PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233104e-72NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0E0LN391e-160A0A0E0LN39_ORYPU; Uncharacterized protein
STRINGOB07G27220.11e-89(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-71nuclear factor Y, subunit B3